Guides
The tour: getting the workbench open, making a first project, and how the pieces fit together.
Written 2026-08-09. Read them in this order if you have never opened the app; skip to Workflows if you have a job to do rather than a tool to learn.
- Install and open — there is no install. The length is spent on the part that matters: the folder on your disk is the source of truth and the browser's storage is a rebuildable cache, so "clear site data" costs one folder re-pick and never your work.
- Your first project — five minutes on a real 4,361 bp plasmid, from a lobby starter through a digest to an export, with a number you can check by hand.
- The workbench tour — the canvas, the tab strip, both rails, the menu bar, the palette, the console and the status line that reports on whatever you have open — and how context moves both ways between a tool and the canvas.
- Files and formats — the 47 formats across 87 extensions, what each one keeps or drops, and the five cases that will not open at all.
- Fetching a record — starting from an accession, a half-remembered name or a chromosome coordinate instead of a file: which archive answers which question, how to take a window rather than a whole chromosome, and why the length printed beside a whole-genome project accession is a contig count, not base pairs.
Per-tool pages live in the ledger; this section is what a reader needs before those make sense.
Workflows
Workflows — "I want to do X, what is the route?" — is the section that answers a real question end to end, across several tools.
- Clone an insert into a vector, and prove it worked — linearize → assemble → predict the gel → verify by Sanger → keep the provenance.
Five more are planned and listed there.
jane*
Scientific computing for the life sciences: plasmid and sequence editing, cloning simulation, primer and qPCR design, gels, Sanger traces, CRISPR guide design, alignment and phylogenetics, proteomics, structures and chemistry, and the file formats around all of it.
Install and open
There is no install. Open the page and the workbench is running.