Canvases
A canvas is how a document is drawn — a form, not a file extension. GenBank, FASTA and SnapGene all open on the same sequence map; CSV, TSV and Parquet all open on the same table.
33 of them. Each one is listed with the file formats that open on it; where a canvas draws a tool's result rather than a file, it has no formats and is grouped separately below.
Drawn from a file
22 kinds. These can also be previewed in the file manager.
| Canvas | Kind | Formats that open here |
|---|---|---|
| Sequence map | sequence-map | GenBank · GenPept · FASTA · SnapGene · Serial Cloner · Gene Construction Kit · Swiss-Prot / UniProt · UniProt XML · SeqTrace project · GFF3 · EMBL · SBOL · RDF (SBOL construction record) · XML (SBOL/JBEI) · JBEI / raw sequence · Geneious · JSON / OpenCloning |
| Chromatogram viewer | chromatogram | AB1 trace · SCF trace · ZTR trace |
| Pileup viewer | pileup | BAM · SAM |
| Alignment viewer | msa | CLUSTAL · Stockholm · PHYLIP · GCG MSF · Aligned FASTA · ACE assembly · Vector NTI AlignX |
| Tree viewer | tree | Newick · Guide tree · NEXUS tree · NeXML · PhyloXML |
| Table | table | CSV · TSV · Excel · Excel (legacy) · Parquet |
| Read quality viewer | fastq | FASTQ |
| Variant table | variants | VCF · BCF |
| Region list | region | BED · AED region list |
| Gene models | gene-models | GTF |
| Markdown viewer | markdown | Markdown |
| SVG viewer | svg | SVG |
| NumPy array viewer | tensor | NumPy array · NumPy archive |
| Structure viewer | structure | PDB structure · CIF structure · NCBI MMDB structure |
| Image viewer | media | PNG · JPEG · GIF · WebP · BMP · AVIF · TIFF |
| Molecule viewer | chemistry | MDL Molfile · SDF · SMILES · MDL reaction · Tripos MOL2 · XYZ coordinates · ChemDraw CDXML · Chemical Markup Language · Ketcher KET · InChI · HELM · AutoDock PDBQT |
| PDF viewer | pdf | |
| Copy-number canvas | copynumber | Affymetrix CNCHP · Affymetrix CYCHP · Affymetrix OSCHP · Affymetrix CHP |
| Plate viewer | plate | RDML |
| Spectrum viewer | spectra | MGF · mzML |
| Variant library | library | Variant library |
| Text viewer | text | Text · HMMER profile · GMT gene sets |
Drawn from a tool result
11 kinds. There is no file behind these — a tool produced them.
| Canvas | Kind | Formats that open here |
|---|---|---|
| Compare to reference | compare | — |
| Digest result | digest | — |
| Gel | gel | — |
| Assembly report | report | — |
| Graph | graph | — |
| Domain architecture | domains | — |
| Hit map | hit-map | — |
| Heatmap | heatmap | — |
| Notebook | notebook | — |
| Verification | verify | — |
| Map image | map-image | — |
Small molecule assessment
Whether a structure sits inside the published drug-likeness property windows, which bound each failing rule broke, which structural alerts it carries, its formula, masses and isotope pattern, its QED drug-likeness score, its synthetic accessibility and natural-product likeness, its Bemis–Murcko scaffold, where it falls on the BOILED-Egg for gut absorption and brain penetration, and how logP, polar surface and charge spread over its atoms.
Sequence map
The plasmid and sequence canvas — the surface most of the workbench draws on, and the one where a misreading is easiest to make and hardest to notice.